PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11523.20
Common NameJCGZ_14624, LOC105643372
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 197aa    MW: 22517.4 Da    PI: 7.8688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11523.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19110161255
            AP2   2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIr+p++ ng  +r +lg++ t+eeAa a+++a+ k++g
  Jcr4S11523.20 110 HYRGVRRRP-WGKFAAEIREPRTkNG--ARLWLGTYETPEEAALAYDRAAFKIRG 161
                    69*******.**********877687..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-14110161IPR001471AP2/ERF domain
PROSITE profilePS5103224.223110169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-30110170IPR001471AP2/ERF domain
SMARTSM003803.6E-38110175IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-22110170IPR016177DNA-binding domain
CDDcd000181.00E-31110171No hitNo description
PRINTSPR003671.2E-13111122IPR001471AP2/ERF domain
PRINTSPR003671.2E-13151171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MHAQSISDLV FLQPIKHQFE APASFDHLYS SFLTENWGDL PLKLDDSEDM IVYDALRDAV  60
NVGWSPSYES DNKAIEVVEE VVRAPKRTVP LEADRESKKN TLPQKRNAMH YRGVRRRPWG  120
KFAAEIREPR TKNGARLWLG TYETPEEAAL AYDRAAFKIR GSKAKLNFPH LVGSDERESS  180
PSMSDNDSVT KKRKLIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-30110176570ATERF1
3gcc_A8e-30110176570ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083859.11e-145PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ404764e-54ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A067K1E31e-145A0A067K1E3_JATCU; Uncharacterized protein
STRINGPOPTR_0014s04600.19e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.19e-55ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]